WebJul 27, 2012 · This package #' performs ML (maximum-likelihood) based inference, but the same functions can easily be #' integrated into a Bayesian analysis via use of MCMC sampling functions from other packages. #' #' Details: BioGeoBEARS allows probabilistic inference of both historical #' biogeography (ancestral geographic ranges on a … Web# When R packages contain extra files, they are stored in the "extdata" directory # inside the installed package. # # BioGeoBEARS contains various example files and scripts in its extdata directory. # # Each computer operating system might install BioGeoBEARS in a different place, # depending on your OS and settings. #
Package ‘BioGeoBEARS’ - mran.microsoft.com
WebWe used the R package ‘BioGeoBEARS’ (Matzke, 2013) to compare biogeographical models and estimate ancestral ranges in the Solanaceae. ‘BioGeoBEARS’ implements maxi-mum likelihood (ML) methods that replicate the key assumptions of three most commonly used methods in his-torical biogeography, namely DEC (dispersal–extinction– WebMay 9, 2024 · The R package BioGeoBEARS provides a framework for testing maximum likelihood and Bayesian models to reconstruct ancestral ranges (Matzke 2013a). The ability to customize models within this package allows new model types to be compared in addition to more widely used models. start of byzantine empire
package ‘GEOquery’ is not available (for R version 3.6.1)
WebMay 15, 2024 · A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. WebMay 29, 2024 · BioGeoBEARS_model_object_to_params_upper: Produce the upper limit on the parameters from a BioGeoBEARS... BioGeoBEARS-package: BioGeography with Bayesian (and likelihood) Evolutionary... BioGeoBEARS_run-class: An object of class BioGeoBEARS_run holding the model inputs; calc_AICc_column: Calculate AICc values … WebApr 12, 2024 · We exported the maximum clade credibility tree inferred in BEAST and a geographical range file into R for historical biogeography reconstruction using the package BioGeoBears (Matzke, 2013). We used six defined regions for our phylogeny: Africa, Asia, Europe, North America, South America and Australia. start of being a graphic designer